Package: phyloregion
Type: Package
Title: Biogeographic Regionalization and Macroecology
Version: 1.0.9
Authors@R: c(person("Barnabas H.", "Daru", email= "darunabas@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-2115-0257")),
             person("Piyal", "Karunarathne", role = c("aut"), comment = c(ORCID = "0000-0002-1934-145X")),
             person("Klaus", "Schliep", email="klaus.schliep@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0003-2941-0161")),
             person("Xiaobei", "Zhao", role=c("ctb")),
             person("Albin", "Sandelin", role=c("ctb")),
             person("Luciano", "Pataro", role=c("ctb")))
Description: Computational infrastructure for biogeography, community
        ecology, and biodiversity conservation (Daru et al. 2020)
        <doi:10.1111/2041-210X.13478>. It is based on the methods
        described in Daru et al. (2020)
        <doi:10.1038/s41467-020-15921-6>. The original conceptual work
        is described in Daru et al. (2017)
        <doi:10.1016/j.tree.2017.08.013> on patterns and processes of
        biogeographical regionalization. Additionally, the package
        contains fast and efficient functions to compute more standard
        conservation measures such as phylogenetic diversity,
        phylogenetic endemism, evolutionary distinctiveness and global
        endangerment, as well as compositional turnover (e.g., beta
        diversity).
Imports: ape, phangorn, Matrix, betapart, parallel, methods,
        colorspace, igraph, clustMixType, maptpx, terra, vegan,
        predicts, smoothr
Suggests: tinytest, knitr, rmarkdown, mapproj, survival, rJava,
        phyloseq, V8
VignetteBuilder: knitr
URL: https://github.com/darunabas/phyloregion,
        https://phyloregion.com/index.html, http://phyloregion.com/
BugReports: https://github.com/darunabas/phyloregion/issues
License: AGPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
biocViews: Software
NeedsCompilation: no
Depends: R (>= 4.1.0)
Packaged: 2026-06-09 07:18:35 UTC; root
Author: Barnabas H. Daru [aut, cre, cph]
        (<https://orcid.org/0000-0002-2115-0257>), Piyal Karunarathne
        [aut] (<https://orcid.org/0000-0002-1934-145X>), Klaus Schliep
        [aut] (<https://orcid.org/0000-0003-2941-0161>), Xiaobei Zhao
        [ctb], Albin Sandelin [ctb], Luciano Pataro [ctb]
Maintainer: Barnabas H. Daru <darunabas@gmail.com>
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libglpk-dev libgmp3-dev libxml2-dev libssl-dev libproj-dev
        libsqlite3-dev libudunits2-dev
Repository: https://darunabas.r-universe.dev
Date/Publication: 2025-07-14 22:54:52 UTC
RemoteUrl: https://github.com/darunabas/phyloregion
RemoteRef: HEAD
RemoteSha: 6ce5a5f8e9eef206592cda3da100ef8f927cda54