Package: phyloregion 1.0.9

phyloregion: Biogeographic Regionalization and Macroecology
Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).
Authors:
phyloregion_1.0.9.tar.gz
phyloregion_1.0.9.zip(r-4.7)phyloregion_1.0.9.zip(r-4.6)phyloregion_1.0.9.zip(r-4.5)
phyloregion_1.0.9.tgz(r-4.6-any)phyloregion_1.0.9.tgz(r-4.5-any)
phyloregion_1.0.9.tar.gz(r-4.7-any)phyloregion_1.0.9.tar.gz(r-4.6-any)
phyloregion_1.0.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phyloregion/json (API)
NEWS
| # Install 'phyloregion' in R: |
| install.packages('phyloregion', repos = c('https://darunabas.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/darunabas/phyloregion/issues
Pkgdown/docs site:https://phyloregion.com
- africa - Plants of southern Africa
Last updated from:6ce5a5f8e9. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 282 | ||
| source / vignettes | OK | 222 | ||
| linux-release-x86_64 | NOTE | 274 | ||
| macos-release-arm64 | NOTE | 216 | ||
| macos-oldrel-arm64 | NOTE | 211 | ||
| windows-devel | NOTE | 645 | ||
| windows-release | NOTE | 599 | ||
| windows-oldrel | NOTE | 668 | ||
| wasm-release | OK | 141 |
Exports:arc_labelsbackgbeta_corebeta_disschoroplethcoldspotscollapse_rangecountsdense2longdense2sparsedirpathEDGEevol_distinctfishnetfitgomfunctional_betaget_cladeshexcolshotspotsindicatorsinfomaplong2denselong2sparsemap_traitmatch_phylo_commMatrixmean_distnodepieoptimal_phyloregionPDPD_sesphylo_endemismphylobetaphylobeta_corephylobeta_sesphylobuilderphyloregionplot_NMDSplot_pieplot.phyloregionplot.sparsepoints2commpolys2commrandom_speciesrandpointsrast_hotspotrast_quantilerast2commread.communityRPDsdmselect_linkageselectbylocationsparse2densesparse2longsparseMatrixtext_NMDStimeslicetree_samplerunifracweighted_endemism
Dependencies:abindapebetapartclassclassIntcliclusterclustMixTypecodetoolscolorspacecombinatcpp11DBIdigestdoSNOWdplyre1071fastmatchforeachgenericsgeometryglueigraphiteratorsitertoolsKernSmoothlatticelifecyclelinproglpSolvemagicmagrittrmaptpxMASSMatrixmgcvminpack.lmnlmepermutephangornpicantepillarpkgconfigpredictsproxyquadprogR6rcddRColorBrewerRcppRcppProgressrlangs2sfslamsmoothrsnowterratibbletidyselectunitsutf8vctrsveganwithrwk
An introduction to the phyloregion package
Rendered fromphyloregion-intro.Rmdusingknitr::rmarkdownon May 10 2026.Last update: 2022-11-16
Started: 2020-01-14
Benchmarking phyloregion
Rendered fromBenchmark.Rmdusingknitr::rmarkdownon May 10 2026.Last update: 2022-11-16
Started: 2020-01-14
Fast Evolutionary Distinctiveness
Rendered fromed.Rmdusingknitr::rmarkdownon May 10 2026.Last update: 2022-11-16
Started: 2020-12-14
